| Fast Swinnex filtration (FSF): a fast and robust sampling and extraction method suitable for metabolomics analysis of cultures grown in complex media |
D.M. McCloskey; J. Utrilla; R.K. Naviaux; B.O. Palsson; A.M. Feist |
2014 |
| Biochemical Characterization of Human Gluconokinase and the Proposed Metabolic Impact of Gluconic Acid as Determined by Constraint Based Metabolic Network Analysis. |
N. Rohatgi; T.Kragh Nielsen; S.Petersen Bjørn; I. Axelsson; G. Paglia; B.Gunnar Voldborg; B.O. Palsson; O. Rolfsson |
2014 |
| A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks. |
H. Nam; M. Campodonico; A. Bordbar; D.R. Hyduke; S. Kim; D.C. Zielinski; B.O. Palsson |
2014 |
| Engineering synergy in biotechnology. |
J. Nielsen; M. Fussenegger; J. Keasling; S.Y. Lee; J.C. Liao; K. Prather; B. Palsson |
2014 |
| Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. |
J.K. Liu; E.J.O. Brien; J.A. Lerman; K. Zengler; B.O. Palsson; A.M. Feist |
2014 |
| Optimizing genome-scale network reconstructions. |
J. Monk; J. Nogales; B.O. Palsson |
2014 |
| Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. |
S.Woo Seo; D. Kim; H. Latif; E.J. O'Brien; R. Szubin; B.O. Palsson |
2014 |
| Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens. |
A.M. Feist; H. Nagarajan; A.E. Rotaru; P.L. Tremblay; T. Zhang; K.P. Nevin; D.R. Lovley; K. Zengler |
2014 |
| From random mutagenesis to systems biology in metabolic engineering of mammalian cells |
H. Hefzi; N.E. Lewis |
2014 |
| Systems glycobiology for glycoengineering. |
P.N. Spahn; N.E. Lewis |
2014 |
| Ion mobility derived collision cross sections to support metabolomics applications. |
G. Paglia; J.P. Williams; L. Menikarachchi; W. Thompson; R. Tyldesley-Worster; S. Halldórsson; O. Rolfsson; A. Moseley; D. Grant; J. Langridge; B.O. Palsson; G. Astarita |
2014 |
| Metabolomic analysis of platelets during storage: a comparison between apheresis- and buffy coat-derived platelet concentrates. |
G. Paglia; O.E. Sigurjónsson; O. Rolfsson; M.Bagge Hansen; S. Brynjólfsson; S. Gudmundsson; B.O. Palsson |
2014 |
| Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. |
H.Marcus Geertz-Hansen; N. Blom; A.M. Feist; S. Brunak; T.Nordahl Petersen |
2014 |
| A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933. |
H. Latif; H.J. Li; P. Charusanti; B.Ø. Palsson; R.K. Aziz |
2014 |
| Determining the control circuitry of redox metabolism at the genome-scale. |
S. Federowicz; D. Kim; A. Ebrahim; J. Lerman; H. Nagarajan; B.K. Cho; K. Zengler; B. Palsson |
2014 |
| Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path. |
M.A. Campodonico; B.A. Andrews; J.A. Asenjo; B.O. Palsson; A.M. Feist |
2014 |
| Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol. |
K.K. Cheng; B.S. Lee; T. Masuda; T. Ito; K. Ikeda; A. Hirayama; L. Deng; J. Dong; K. Shimizu; T. Soga; M. Tomita; B.O. Palsson; M. Robert |
2014 |
| Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations. |
T.E. Sandberg; M. Pedersen; R.A. LaCroix; A. Ebrahim; M. Bonde; M.J. Herrgard; B.O. Palsson; M. Sommer; A.M. Feist |
2014 |
| Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina. |
W. Fu; G. Paglia; M. Magnúsdóttir; E.A. Steinarsdóttir; S. Gudmundsson; B.O. Palsson; O.S. Andrésson; S. Brynjólfsson |
2014 |
| Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states. |
B.K. Cho; D. Kim; E.M. Knight; K. Zengler; B.O. Palsson |
2014 |
| Path2Models: large-scale generation of computational models from biochemical pathway maps. |
F. Büchel; N. Rodriguez; N. Swainston; C. Wrzodek; T. Czauderna; R. Keller; F. Mittag; M. Schubert; M. Glont; M. Golebiewski; M. van Iersel; S. Keating; M. Rall; M. Wybrow; H. Hermjakob; M. Hucka; D.B. Kell; W. Müller; P. Mendes; A. Zell; C. Chaouiya; J. Saez-Rodriguez; F. Schreiber; C. Laibe; A. Dräger; N. Le Novère |
2013 |
| Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion mutant. |
N.L. Fong; J.A. Lerman; I. Lam; B.O. Palsson; P. Charusanti |
2013 |
| Sulfide-driven microbial electrosynthesis. |
Y. Gong; A. Ebrahim; A.M. Feist; M. Embree; T. Zhang; D. Lovley; K. Zengler |
2013 |
| Parkinson's disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein. |
F. Büchel; S. Saliger; A. Dräger; S. Hoffmann; C. Wrzodek; A. Zell; P.J. Kahle |
2013 |
| Multispecific Drug Transporter Oat3 (Slc22a8) Regulates Multiple Metabolic Pathways. |
W. Wu; N. Jamshidi; S.A. Eraly; H.C. Liu; K.T. Bush; B.O. Palsson; S.K. Nigam |
2013 |
| Analysis of omics data with genome-scale models of metabolism. |
D.R. Hyduke; N.E. Lewis; B.Ø. Palsson |
2013 |
| COBRApy: COnstraints-Based Reconstruction and Analysis for Python. |
A. Ebrahim; J.A. Lerman; B.O. Palsson; D.R. Hyduke |
2013 |
| Inferring the metabolism of human orphan metabolites from their metabolic network context affirms human gluconokinase activity. |
O. Rolfsson; G. Paglia; M. Magnusdóttir; B.Ø. Palsson; I. Thiele |
2013 |
| Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association. |
H. Nagarajan; M. Embree; A.E. Rotaru; P.M. Shrestha; A.M. Feist; B.Ø. Palsson; D.R. Lovley; K. Zengler |
2013 |
| Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. |
N.E. Lewis; X. Liu; Y. Li; H. Nagarajan; G. Yerganian; E. O'Brien; A. Bordbar; A.M. Roth; J. Rosenbloom; C. Bian; M. Xie; W. Chen; N. Li; D. Baycin-Hizal; H. Latif; J. Forster; M.J. Betenbaugh; I. Famili; X. Xu; J. Wang; B.O. Palsson |
2013 |